[via e-mail]

So:

Neo = Christ
Morpheus = John the Baptist (the Oracle kind of is too, maybe?)
Trinity = Mary Magdalene
Cipher = Judas

I have a sneaking suspicion Tank and Dozer = the fishermen, but that's just
a gut feeling.

Waking up inna pod = baptism, only with no doves D:
Death, return, and ascension

Fight inna lobby = storming the temple?

Far from a 1:1 parallel, but I'm having fun, so.